Welcome to tfbs_footprinting’s documentation!
¶
Contents:
1. Introduction
1.1 Basics
1.2 Experimental data
1.3 Ensembl transcript-ids
2. Installation
2.1 Pypi installation
2.2 Docker installation
2.3 Requirements
3. Input
3.1: CSV of Ensembl transcript IDs and arguments
3.2: Text file of IDs
3.3: Text file TF IDs
4. Output
4.1 Promoter Figure
4.2 Table of predictions
4.2 Addtional outputs
5. Examples
5.1 TFBS_footprinter Use Examples
5.2 TFBS_footprinter Use Examples
Within Docker
5.3 Update experimental data files
6. Arguments
7. Process
7.1 Steps
7.2 Flowchart
8. Species
8.1 Ensembl
8.2 Species table
9. Troubleshooting
9.1 Log file
9.1 Docker
Indices and tables
¶
Index
Module Index
Search Page
tfbs_footprinting
Navigation
1. Introduction
2. Installation
3. Input
4. Output
5. Examples
6. Arguments
7. Process
8. Species
9. Troubleshooting
Related Topics
Documentation overview
Next:
1. Introduction
Quick search